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In Jones et al. (2018) we call a dataset uploaded to the Dryad Digital Athenaeum (Dataset 112) absolute 63,070 altered raw time-lapse images captured by the Penguin Watch alien camera network, metadata for these photographs (e.g. date/time and temperature information), raw anonymised classifications from the Penguin Watch aborigine science project, and ‘consensus clicks’ acquired from these classifications10,13. Amuse accredit to Jones et al. (2018 & 2019) for abounding capacity and an account of these abstracts types.



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Here we present a additional dataset fabricated accessible through the Dryad Digital Athenaeum (Dataset 215). This contains two capital book types. Firstly, files absolute abstracts anon acquired from Penguin Watch aborigine science classifications: Kraken Files and Narwhal Files (Online-only Table 2; produced application the Kraken Script and Narwhal Script, respectively), Narwhal Plots (Fig. 4 and Table 1; generated application the Narwhal Plotting Script), and Penguin Watch Narwhal Animations (Table 1, produced application GIMP (v2.8)21 and VirtualDub (v1.10.4)22. Secondly, files produced application computer eyes – i.e. the Pengbot CNN (albeit initially accomplished on aborigine science dot annotations): Pengbot Out Files, Pengbot Body Maps, and Pengbot Calculation Files (Table 2). All of these files anon chronicle to those provided in Dataset 112; i.e. an archetype aural every book blazon is provided for anniversary of the 63,070 raw time-lapse images captured by 14 cameras, acceptation the processing activity can be traced for every photograph.



The Narwhal Artifice for MAIVb2012a_000661 (the aftermost angel in the MAIVb2012a abstracts set, accordingly assuming the complete trends for the abstracts series). The artifice comprises, from top down: the aboriginal time-lapse angel (found in Dataset 112), blueprint 1: cardinal of adults and breed (moving average, n = 20), blueprint 2: boilerplate banty ‘second abutting neighbour distances’ (moving average, n = 2), and blueprint 3: beggarly developed ‘nearest neighbour distance’ amid the ith and (i-1)th angel (moving average, n = 20).

Also included in the athenaeum (Dataset 215) are a Penguin Watch Manifest file, absolute metadata for all of the images, and a Method Allegory File, which contains assay of gold standard, aborigine science and Pengbot counts for 1183 Penguin Watch images (see Technical Validation).



Altered angel advertence for identification, in the format: SITExYEARx_imagenumber; e.g. DAMOa2014a_000001.

datetime: Time and date advice for the image, in the architecture YYYY:MM:DD HH:MM:SS.

zooniverse_id: Altered identification cipher assigned to anniversary angel aural Zooniverse (the online belvedere that hosts Penguin Watch – see www.zooniverse.org).

path: Folder pathway, which includes the angel name (e.g. DAMOa/DAMOa2014a_000025).

classification_count: Cardinal of volunteers who classified the angel afore it was retired.

state: State of achievement – either complete (the angel has been apparent to the adapted cardinal of volunteers) or abridged (the angel requires allocation by added volunteers).

temperature_f: Temperature (in degrees Fahrenheit, as recorded by the camera) at the time the photograph was taken.

lunar_phase: Moon appearance back the angel was captured (one of eight options: “full” (full), “new” (new), “newcres” (new crescent), “firstq” (first quarter), “waxinggib” (waxing gibbous), “waninggib” (waning gibbous), “lastq” (last quarter) or “oldcres” (old crescent)).

URL: Link to an online thumbnail angel of the time-lapse photograph (lower resolution than the raw time-lapse adumbration included in the repository, but advantageous for reference).

Kraken Files comprise filtered ‘consensus clicks’ and metadata (Online-only Table 2). The clarification beginning levels are ‘num_markings > 3’ for adults and ‘num_markings > 1’ for breed and eggs (see Methods). Anniversary row contains the afterward information. Amuse agenda that breadth ‘NA’ is accustomed for anticipation values, ‘num_markings’, ‘x_centre’ and ‘y_centre’, no penguins accept been articular in the image.

name: Altered angel advertence for identification, in the format: SITExYEARx_imagenumber; e.g. DAMOa2014a_000001.

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probability_of_adult: Estimated anticipation that the agnate alone is an developed – based on the cardinal of volunteers classifying it as such, as a admeasurement of the absolute cardinal of clicks on that individual.

probability_of_chick: Estimated anticipation that the agnate alone is a banty – based on the cardinal of volunteers classifying it as such, as a admeasurement of the absolute cardinal of clicks on that individual.

probability_of_egg: Estimated anticipation that the agnate appearance indicates an egg – based on the cardinal of volunteers classifying it as such, as a admeasurement of the absolute cardinal of clicks on that area.

num_markings: The cardinal of advance clicks that were aggregated to aftermath the ‘consensus click’ alike ethics (i.e. the cardinal of alone clicks on a specific breadth of the image). Owing to the clarification process, num_markings is ‘>3’ for adults and ‘>1’ for breed and eggs in the files provided alongside this Abstracts Descriptor. These beginning levels can be afflicted in the Kraken Script, to actualize Kraken Files with altered degrees of filtering.

x_centre: x alike amount (in pixels) for the ‘consensus click’ (i.e. the alike affected by the absorption algorithm)10,14. The agent (point 0, 0) is amid in the top left-hand bend of the image, acceptation it may be all-important to about-face the y-axis of a artifice in adjustment to bury the ‘consensus clicks’ correctly. One alike amount denotes one alone penguin/‘other’.

y_centre: y alike amount (in pixels) for the ‘consensus click’ (i.e. the alike affected by the absorption algorithm)10,14. The agent (point 0, 0) is amid in the top left-hand bend of the image, acceptation it may be all-important to about-face the y-axis of a artifice in adjustment to bury the ‘consensus clicks’ correctly. One alike amount denotes one alone penguin/‘other’.

For datetime, temperature_f, lunar_phase and URL amuse see ‘Penguin Watch Manifest’.

Narwhal Files accommodate penguin calculation data, ‘nearest neighbour distance’ metrics, and metadata. Anniversary row contains the afterward advice (Online-only Table 2):

imageid: Altered angel advertence for identification, in the format: SITExYEARx_imagenumber; e.g. DAMOa2014a_000001.

nadults: The absolute cardinal of adults counted in the agnate image, based on filtered (here, num_markings > 3) ‘consensus click’ abstracts (see Kraken Files).

nchicks: The absolute cardinal of breed counted in the agnate image, based on filtered (here, num_markings > 1) ‘consensus click’ abstracts (see Kraken Files).

neggs: The absolute cardinal of eggs counted in the agnate image, based on filtered (here, num_markings > 1) ‘consensus click’ abstracts (see Kraken Files).

adultndout: The beggarly developed ‘nearest neighbour distance’. Affected by demography the ambit amid anniversary developed and its abutting (adult) neighbour, and award the beggarly average.

adultsdndout: Accepted aberration of the developed ‘nearest neighbour distances’.

chickndout: The beggarly banty ‘nearest neighbour distance’. Affected by demography the ambit amid anniversary banty and its abutting (chick) neighbour, and award the beggarly average.

chicksdndout: Accepted aberration of the banty ‘nearest neighbour distances’.

chick2ndout: The beggarly ambit amid anniversary banty and its additional abutting (chick) neighbour aural anniversary image. The additional abutting neighbour is affected because the Pygoscelis penguins (the primary focus of the Penguin Watch camera network) usually lay two eggs. Since a chick’s abutting neighbour is accordingly acceptable to be its affinity in the nest, the ambit to the additional abutting neighbour is calculated, to accommodate added advice about the spatial administration of breed aural the colony.

chicksd2ndout: Accepted aberration of the banty ‘second abutting neighbour distances’.

meanchangeadult: Movement of anniversary developed [j] amid angel [i-1] and angel [i]. This is affected by appending the xy alike of developed [j] in angel [i] to a dataframe of the developed xy coordinates in angel [i-1], and artful the ‘nearest neighbour distance’ for developed [j]. The abutting developed to [j] is acceptable itself in the antecedent image, accordingly this ambit represents movement amid the two images. It is accessible that the abutting neighbour is a altered individual, so a beggarly boilerplate is affected to accommodate an adumbration of movement aural the acreage of view. This metric is best adapted amid evolution and the end of the bouncer phase, back adults are generally at the backup (see Methods).

meanchangechick: Movement of anniversary banty [k] amid angel [i-1] and angel [i]. This is affected by appending the xy alike of banty [k] in angel [i] to a dataframe of the banty xy coordinates in angel [i-1], and artful the ‘nearest neighbour distance’ for banty [k]. The abutting banty to [k] is acceptable itself in the antecedent image, accordingly this ambit represents movement amid the two images. It is accessible that the abutting neighbour is a altered individual, so a beggarly boilerplate is affected to accommodate an adumbration of movement aural the acreage of view. This metric is best adapted amid evolution and the end of the bouncer phase, back breed are at the backup (see Methods).

tempf: Temperature (in degrees Fahrenheit, as recorded by the camera) at the time the photograph was taken.

tempc: Temperature (in degrees Celsius) at the time the photograph was taken.

For datetime, lunar_phase and URL, amuse see ‘Penguin Watch Manifest’

Narwhal Plots (see Fig. 4), generated application the Narwhal Plotting Script, accommodate a visualisation of arbitrary statistics: blueprint 1: affluence of adults and chicks; blueprint 2: banty ‘second abutting neighbour distances’; and blueprint 3: beggarly developed ‘nearest neighbour distance’ amid the ith and (i-1)th image. A artifice is produced for anniversary time-lapse angel (Table 1), assuming the affective boilerplate trends up to, and including, that image. Therefore, to see the complete trend, a artifice should be created for the final angel in the abstracts series. The complete sets of graphs accept been acclimated to actualize Penguin Watch Narwhal Animations, which appearance the trends developing through time, alongside the time-lapse images. The folders of Narwhal Plots and Penguin Watch Narwhal Animations accord to those declared in Table 4 of Jones et al. (2018) (with the barring of PETEd2013, which is not included as it is a alike angel set of PETEc2014).

Pengbot Out Files are MATLAB files absolute a cast of ‘penguin densities’, affected application the Pengbot model. A body amount is provided for anniversary pixel in the agnate raw time-lapse photograph. A book is provided (in Dataset 215) for anniversary of the 63,070 images presented in Dataset 112; they are afar into folders according to camera (e.g. DAMOa_pengbot_out) (Table 2).

A Pengbot Body Map (Dataset 215), generated application the Pengbot Counting Script (see Cipher Availability), is provided for anniversary of the 63,070 raw time-lapse photographs presented in Dataset 112. The maps are a beheld representation of the pixel densities presented in the Pengbot Out Files. Maps are stored in the database according to camera (e.g. DAMOa_density_map) (Table 2; Fig. 3, right).

These are generated application the Pengbot Counting Script (see Cipher Availability). They accommodate a penguin calculation (adults and breed combined) for anniversary angel by accretion the ‘penguin density’ of anniversary pixel in the Pengbot Out Files (Table 2).

imageid: Altered angel advertence for identification, in the format: SITExYEARx_imagenumber; e.g. DAMOa2014a_000001.

raw_count: The cardinal of penguins in the image, as affected by the Pengbot model11. Since the counts are generated by accretion pixel densities, they are absurd to be an accumulation value.

count: The cardinal of penguins in the angel as affected application Pengbot, angled to the abutting integer.

This book contains penguin counts for 1183 images, from four altered cameras – DAMOa (Damoy Point; n = 300), HALFc (Half Moon Island; n = 283), LOCKb (Port Lockroy; n = 300) and PETEc (Petermann Island; n = 300) – as affected by an able (‘Gold Standard’), through Penguin Watch (‘Citizen Science’), and by Pengbot (‘Computer Vision’).

imageid: Altered angel advertence for identification, in the format: SITExYEARx_imagenumber; e.g. DAMOa2014a_000001.

datetime: Time and date advice for the image, in the architecture YYYY:MM:DD HH:MM:SS.

GS_adults: The cardinal of penguin adults in the agnate image, as articular and affected by an expert.

GS_combined: The cardinal of penguin adults and breed in the agnate image, as articular and affected by an expert.

CS_adults: The cardinal of penguin adults in the agnate image, generated application amassed aborigine science abstracts from the Penguin Watch activity (threshold = num_markings > 3).

CS_combined: The cardinal of penguin adults and chicks, as generated application amassed aborigine science abstracts from the Penguin Watch activity (threshold = num_markings > 3 for adults and num_markings > 1 for chicks).

CV_rounded: The angled cardinal of penguin individuals (adults and breed combined) in the agnate image, affected application the Pengbot model11.

The book additionally includes columns for six comparisons:

GS_combined vs. CV_rounded; GS_adults vs. CV_rounded; CS_combined vs. CV_rounded; CS_adults vs. CV_rounded; GS_combined vs. CS_combined; GS_adults vs. CS_adults.

Two columns are provided for anniversary comparison. The aboriginal cavalcade shows the aberration (in raw cardinal of penguins) amid the counts generated via the two methods. For example, if the gold accepted accumulated calculation was 15 and the computer eyes calculation was 12, again the ‘GS_combined vs. CV_rounded’ cavalcade would accommodate the amount 3. The additional cavalcade shows the aforementioned values, with any abrogating signs removed (whether the counts are under- or over-estimates is extraneous back artful boilerplate differences).

The boilerplate aberration in counts, the accepted aberration of this difference, the admeasurement of counts that are according or alter by alone one penguin, and the cardinal of over- and under-estimates are additionally provided in the spreadsheet (and summarised in Table 3). Overestimates and underestimates chronicle to the additional variable, i.e. for ‘GS_combined vs. CV_rounded’, an ‘underestimate’ would beggarly an belittle by computer vision, as compared to the gold standard.

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